Theses

This page lists all theses written by students working at the research group. Lists of publications and posters are also provided.

Analysis of Mechanism of Action of the Opioid Receptor during Morphine activation

Donya Darwish completed the B.Sc. thesis on July 3, 2023 advised by Aly Abotaleb, Engy Nasr and Simon Pf ̈affle and evaluated by Prof. Dr. Stefan Günther

Development of computational approaches for inhibitor identification of aromatic cage containing proteins with a focus on CHD1

Li, Jianyu completed the Ph.D thesis on June 26, 2023 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther & Prof. Dr. Einsle, Oliver

Recognition of Functional Relationships between Biomedical Concepts in the Scientific Literature using Text Mining and Machine Learning

Ammar Qaseem completed the Ph.D thesis on June 7, 2023 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther & Prof. Dr. Rolf Backofen

Expediting small-molecule drug discovery through the integration of chemogenomics databases with predictive modeling

Moumbock, Aurélien F. A. completed the Ph.D thesis on Nov. 11, 2022 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther & Prof. Dr. Henning J. Jessen

Extraktion von Produktinformationen aus wissenschaftlicher Literatur unter Verwendung von Text- und Data Mining

Rico Gießler completed the B.Sc. thesis on Oct. 12, 2022 advised by Prof. Dr. Stefan Günther and M.Sc. Ammar Qaseem and evaluated by Prof. Dr. Stefan Günther

Discovery of novel antibiotics by virtual screening of bacterial lectins

Dipendu Dhar completed the M.Sc. thesis on Sept. 22, 2022 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther and Prof. Dr. Wolfgang Sippl

Automated classification of drug-protein interactions in scientific literature using machine learning techniques

Manuel Dorer completed the B.Sc. thesis on March 31, 2021 advised by M.Sc. Ammar Qaseem and evaluated by Prof. Dr. Stefan Günther and Jun.-Prof. Dr. Jennifer Andexer

Supervised multi-label classification of binary molecular fingerprint from 1H and 13C NMR spectra

Sinclair Rockwell-Kollmann completed the M.Sc. thesis on Dec. 7, 2020 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther and Prof. Dr. Renato Murillo

Automatisiertes Design potentieller Wirkstoffe basierend auf etablierten Syntheseregeln der Organischen Chemie

Miriam Juliane Tschaar completed the M.Sc. thesis on March 29, 2019 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther and Prof. Dr. Henning J. Jessen

Metagenomic analysis of the human microbiome from the upper to lower gastrointestinal tract using different taxonomic reference databases

Jingxuan Wang completed the M.Sc. thesis on March 15, 2019 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther and Prof. Dr. Evelyn Lamy

Analysing the mode of action of drugs with antibiotical activities

Patrick Penk completed the B.Sc. thesis on Feb. 15, 2019 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther and Prof. Dr. Andreas Bechthold

Epigenetic drug discovery in the model organism Drosophila melanogaster and identification of putative drug targets for Plasmodium falciparum

Jianyu Li completed the M.Sc. thesis on Jan. 8, 2018 advised by M.Pharm. Pankaj Mishra and evaluated by Prof. Dr. Stefan Günther and Prof. Dr. Oliver Einsle

Differentielle Genexpression von CLL-Zellen bei Behandlung mit 4-Acyl-Pyrrolen

Martin Haslberger completed the B.Sc. thesis on Dec. 13, 2017 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther and Prof. Dr. Christoph Lönarz

Development of a target prediction pipeline based on substructures of pharmaceutical compounds

Lea Purschke completed the M.Sc. thesis on Nov. 28, 2017 advised by M.Sc Kiran Telukunta and evaluated by Prof. Dr. Stefan Günther and Dr. Horacio Pérez-Sánchez

Identification of novel inhibitors of target proteins from Plasmodium falciparum.

Peilin Tu completed the Bachelor of Science thesis on June 1, 2017 advised by M.Sc. Mehrosh Pervaiz and M.Sc. Pankaj Mishra and evaluated by Prof. Dr. Stefan Günther

Identification and model‐based optimization of BRPF1 inhibitors.

Yuan Ni completed the M.Sc. thesis on Aug. 1, 2016 advised by M.Sc. Mehrosh Pervaiz and evaluated by Prof. Dr. Stefan Günther and Prof. Dr. Oliver Einsle

Protein-interacting drugs: An exploration of the potential of fragment-based target prediction

Laura van Hazendonk completed the Bachelor thesis on July 5, 2016 advised by M.Sc Kiran Telukunta and evaluated by Prof. Dr. Stefan Günther

Fragmentbasierte Analyse von Struktur-Wirkungsbeziehungen kleiner Moleküle

Moritz Konrad completed the Bachelor thesis on June 15, 2016 advised by M.Sc Kiran Telukunta and evaluated by Prof. Dr. Stefan Günther

Evaluation verschiedener Prozessierungsmethoden für die Auswertung von DNA-Methylierungsdaten unterschiedlicher Zelltypen mithilfe der Plattform Infinium HumanMethylation450

M.Sc Stephan Flemming completed the Ph.D thesis on April 28, 2016 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther

Integrierte bioinformatische Methoden zur reproduzierbaren und transparenten Hochdurchsatz-Analyse von Life Science Big Data

Björn Grüning completed the Ph.D thesis on Oct. 31, 2015 advised by Prof. Dr. Stefan Günther and evaluated by Prof. Dr. Stefan Günther & Prof. M.Müller

Strukturbasierte in silico-Identifizierung vorhergesagter Polyketide produziert von modularen Typ I-Polyketidsynthasen

Dimitar Yonchev completed the Dipl.-Pharm thesis on Oct. 29, 2015 advised by Jun.-Prof. Dr. Stefan Günther and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Andreas Bechthold

Implementierung eines Analyseschemas für die Auswertung von DNA-Methylierungsdaten in Galaxy und Anwendung auf einen Datensatz mit rezidiven CLL-Zellen nach FCR-Therapie

Simon Bohleber completed the Master of Science thesis on Sept. 21, 2015 advised by M.Sc. Stephan Flemming and evaluated by Jun.-Prof. Dr. Stefan Günther

Identification of new inhibitors of BRWD3

Anika Nietzer completed the Bachelor of Science thesis on Aug. 27, 2015 advised by M.Sc. Mehrosh Pervaiz and evaluated by Jun.-Prof. Dr. Stefan Günther

Untersuchung der strukturellen Diversität von Naturstoffen aus Streptomyces spec

Sören Jahn completed the BSc Pharm thesis on July 31, 2015 advised by M.Sc. Xavier Lucas and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Andreas Bechthold

Extraction of Compound-Protein Interactions from PubMed Using the All-Paths Graph Kernel

Elham Abbasian completed the Master of Science thesis on April 20, 2015 advised by M.Sc. Kersten Döring and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Rolf Backofen

Phylogenetische Klassifizierung von Antibiotika-produzierenden Streptomyceten-Stämmen

Alina Ostendorf completed the BSc Pharm thesis on Feb. 15, 2015 advised by Dipl.-Pharm. Dennis Klementz and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Andreas Bechthold

Discovery of small molecules modulating protein-protein interactions

M.Sc Xavier Lucas completed the Ph.D thesis on Oct. 31, 2014 advised by Jun.-Prof. Dr. Stefan Günther and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Manfred Jung

Entwicklung einer Software zur Unterstützung der strukturbasierten Wirkstofffindung gegen Bromodomänen

Lucas Paetow completed the Bachelor of Science thesis on Sept. 29, 2014 advised by Jun.-Prof. Dr. Stefan Günther and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Oliver Einsle

Experimentelle Validierung der metabolischen Modells des Antibiotika produzierenden Streptomyces sp. Tü6071

Julian Schill completed the Bachelor of Science thesis on July 25, 2014 advised by Dipl.-Pharm. Dennis Klementz and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Andreas Bechthold

ModPKSFinder - towards in silico discovery of novel polyketides

Natalia Padilla completed the Master of Science thesis on July 1, 2014 advised by Jun.-Prof. Dr. Stefan Günther and evaluated by Jun.-Prof. Dr. Stefan Günther

Pharmakophor-basierte Suche nach neuen Inhibitoren von CREBBP

Can Bittner completed the Bachelor of Science thesis on Feb. 27, 2014 advised by M.Sc. Xavier Lucas and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Manfred Jung

Automatisierte Identifizierung funktioneller Beziehungen zwischen Kleinmolekülen und Proteinen in Texten

Michael Becer completed the Bachelor of Science thesis on Jan. 27, 2014 advised by M.Sc. Kersten Döring and evaluated by Jun.-Prof. Dr. Stefan Günther & Dr. Martin Mann

Untersuchung des metabolischen Regulationsnetzwerks des Antibiotika produzirenden Streptomyces sp. Tü6071

Dennis Klementz completed the Dipl.-Pharm. thesis on Dec. 3, 2013 advised by Dr. Anika Erxleben and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Andreas Bechthold

Identification of Molecular Descriptors for Toxicity Prediction of Small Molecules

Lina Maren Grüger completed the Bachelor of Science thesis on Nov. 21, 2013 advised by M.Sc. Kersten Döring and evaluated by Jun.-Prof. Dr. Stefan Günther & Dr. Fabrizio Costa

Systembiologische Modellierung des Antibiotika-produzierenden Bakteriums Streptomyces sp. Tü6071

Michael Damrat completed the Bachelor of Science thesis on May 31, 2013 advised by Dr. Anika Erxleben and evaluated by Jun. - Prof. Dr. Stefan Günther & Prof. Dr. Andreas Bechthold

Analyse der Beziehung zwischen DNA Methylierung und Genexpression im humanen Genom

Wilhelm Schulz completed the Bachelor of Science thesis on April 30, 2013 advised by M.Sc. Stephan Flemming and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Manfred Jung

Charakterisierung des chemischen Raums mittels physiko-chemischer Deskriptoren

Stefan Bleher completed the Bachelor of Science thesis on Feb. 1, 2013 advised by M.Sc. Björn Grüning & M.Sc. Xavier Lucas and evaluated by Jun.-Prof. Dr. Stefan Günther & Jun.-Prof. Dr. Jennifer Andexer

Einfluss des DNA-Methylierungsmusters auf die Genregulation der menschlichen Zelle

Simon Bohleber completed the Bachelor of Science thesis on Nov. 30, 2012 advised by M.Sc. Stephan Flemming and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Manfred Jung

Etablierung der Produktion von Phenalinolactonen durch Streptomyces sp. Tü6071 im Bioreaktor

Johannes Mosch completed the Diplom thesis on Nov. 30, 2012 advised by Dr. Anika Erxleben and evaluated by Jun.-Prof. Dr. Stefan Günther & Prof. Dr. Andreas Bechthold

Genomannotation und Charakterisierung des Avilamycin produzierenden Bakteriums Streptomyces viridochromogenes Tü57

Anna Hähnlein completed the Bachelor of Science thesis on June 28, 2012 advised by M.Sc. Björn Grüning and evaluated by Jun. - Prof. Dr. Stefan Günther & Prof. Dr. Andreas Bechthold